Index
A
|
C
|
D
|
E
|
F
|
G
|
H
|
M
|
P
|
R
|
S
|
T
|
W
A
ases_df() (in module aspring.step_08_ASRUs)
aspring
module
aspring.main
module
aspring.step_01_preprocess
module
aspring.step_02_hmm_maker
module
aspring.step_03_hmm_aligner
module
aspring.step_04_gettable
module
aspring.step_05_filter
module
aspring.step_06_stats
module
aspring.step_07_reformat
module
aspring.step_08_ASRUs
module
aspring.step_09_clean
module
aspring.step_10_struct
module
C
check_if_executable_exists() (in module aspring.main)
codage() (in module aspring.step_08_ASRUs)
D
download_alphafold_structure() (in module aspring.step_10_struct)
download_pdb_structures() (in module aspring.step_10_struct)
dupraw2table() (in module aspring.step_04_gettable)
E
event_to_pairs() (in module aspring.step_08_ASRUs)
eventsDup_df() (in module aspring.step_08_ASRUs)
extension_marge_pair() (in module aspring.step_08_ASRUs)
extensionbis() (in module aspring.step_08_ASRUs)
F
filter() (in module aspring.step_05_filter)
G
get_alnCols() (in module aspring.step_08_ASRUs)
get_arg_parser() (in module aspring.main)
(in module aspring.step_01_preprocess)
(in module aspring.step_02_hmm_maker)
(in module aspring.step_03_hmm_aligner)
(in module aspring.step_04_gettable)
(in module aspring.step_05_filter)
(in module aspring.step_06_stats)
(in module aspring.step_07_reformat)
(in module aspring.step_08_ASRUs)
(in module aspring.step_09_clean)
(in module aspring.step_10_struct)
get_asrus() (in module aspring.step_10_struct)
get_pdb_sequence_length() (in module aspring.step_10_struct)
get_pdb_span() (in module aspring.step_10_struct)
get_sexon_coord() (in module aspring.step_10_struct)
get_sexon_id() (in module aspring.step_10_struct)
get_transcript_sequence_length() (in module aspring.step_10_struct)
get_transcripts() (in module aspring.step_10_struct)
get_uniprot_id_from_filename() (in module aspring.step_10_struct)
get_uniprot_ids() (in module aspring.step_10_struct)
H
hhr2df() (in module aspring.step_04_gettable)
hmm_aligner() (in module aspring.step_03_hmm_aligner)
hmm_maker() (in module aspring.step_02_hmm_maker)
M
module
aspring
aspring.main
aspring.step_01_preprocess
aspring.step_02_hmm_maker
aspring.step_03_hmm_aligner
aspring.step_04_gettable
aspring.step_05_filter
aspring.step_06_stats
aspring.step_07_reformat
aspring.step_08_ASRUs
aspring.step_09_clean
aspring.step_10_struct
P
parse_args() (in module aspring.main)
(in module aspring.step_01_preprocess)
(in module aspring.step_02_hmm_maker)
(in module aspring.step_03_hmm_aligner)
(in module aspring.step_04_gettable)
(in module aspring.step_05_filter)
(in module aspring.step_06_stats)
(in module aspring.step_07_reformat)
(in module aspring.step_08_ASRUs)
(in module aspring.step_09_clean)
(in module aspring.step_10_struct)
preprocess_msas() (in module aspring.step_01_preprocess)
R
read_fasta() (in module aspring.step_04_gettable)
reformate() (in module aspring.step_07_reformat)
rm_tempfiles() (in module aspring.step_09_clean)
run() (in module aspring.main)
(in module aspring.step_01_preprocess)
(in module aspring.step_02_hmm_maker)
(in module aspring.step_03_hmm_aligner)
(in module aspring.step_04_gettable)
(in module aspring.step_05_filter)
(in module aspring.step_06_stats)
(in module aspring.step_07_reformat)
(in module aspring.step_08_ASRUs)
(in module aspring.step_09_clean)
(in module aspring.step_10_struct)
run_pipeline() (in module aspring.main)
run_r_script() (in module aspring.step_06_stats)
S
sexSize() (in module aspring.step_08_ASRUs)
sim_graph_initial() (in module aspring.step_08_ASRUs)
sim_graph_initial_bis() (in module aspring.step_08_ASRUs)
sim_graph_workframe() (in module aspring.step_08_ASRUs)
T
test_rscript_availability() (in module aspring.step_06_stats)
W
write_pml() (in module aspring.step_10_struct)
writecsv_ASRU() (in module aspring.step_08_ASRUs)
aspring
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