aspring package
===============

Submodules
----------

aspring.main module
-------------------

.. automodule:: aspring.main
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aspring.step\_01\_preprocess module
-----------------------------------

.. automodule:: aspring.step_01_preprocess
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aspring.step\_02\_hmm\_maker module
-----------------------------------

.. automodule:: aspring.step_02_hmm_maker
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aspring.step\_03\_hmm\_aligner module
-------------------------------------

.. automodule:: aspring.step_03_hmm_aligner
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aspring.step\_04\_gettable module
---------------------------------

.. automodule:: aspring.step_04_gettable
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aspring.step\_05\_filter module
-------------------------------

.. automodule:: aspring.step_05_filter
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aspring.step\_06\_stats module
------------------------------

.. automodule:: aspring.step_06_stats
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aspring.step\_07\_reformat module
---------------------------------

.. automodule:: aspring.step_07_reformat
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aspring.step\_08\_ASRUs module
------------------------------

.. automodule:: aspring.step_08_ASRUs
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aspring.step\_09\_clean module
------------------------------

.. automodule:: aspring.step_09_clean
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aspring.step\_10\_struct module
-------------------------------

.. automodule:: aspring.step_10_struct
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Module contents
---------------

.. automodule:: aspring
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